- Date
- July 18, 2016
07/18/16 @ 09:15-10:00 Tutorial by Brian Browning An Introduction to Genotype Imputation 1. Marchini, J. and Howie, B., 2010. Genotype imputation for genome-wide association studies. Nature […]- Date
- July 18, 2016
07/18/2016 @ 10:00-10:45 Tutorial by William (Xiaoquan) Wen Bayesian Statistics and its Application to Integrative Statistical Genomics 1. Stephens, M. and Balding, D.J., 2009. Bayesian statistical […]- Date
- July 18, 2016
07/18/2016 @ 14:00-14:45 Research Talk by Leonid Kruglyak Genetic Basis of Complex Traits 1. Sadhu, M.J., Bloom, J.S., Day, L. and Kruglyak, L., 2016. CRISPR-directed mitotic […]- Date
- July 18, 2016
07/18/2016 @ 15:15-16:15 Research Talk by Carlos Bustamante Interpreting Human Variation in the Personal Genome Era 1. Shringarpure, S.S. and Bustamante, C.D., 2015. Privacy risks from […]- Date
- July 19, 2016
07/19/16 @ 09:15-10:00 Tutorial by Alexander Schönhuth Snakemake: Reproducible and Scalable Data Analysis 1. Köster, J. and Rahmann, S., 2012. Snakemake—a scalable bioinformatics workflow engine. Bioinformatics, […]- Date
- July 19, 2016
07/19/2016 @ 10:00-10:45 Tutorial by Jo Hardin Tutorial on RNASeq Normalization and Differential Expression 1. Wang, Z., Gerstein, M. and Snyder, M., 2009. RNA-Seq: a revolutionary […]- Date
- July 19, 2016
07/19/2016 @ 14:00-14:45 Tutorial by Sohini Ramachandran Genomic Reconstructions of Deep Human History 1. Palacios, J.A., Wakeley, J. and Ramachandran, S., 2015. Bayesian nonparametric inference of […]- Date
- July 19, 2016
07/19/2016 @ 15:15-16:00 Tutorial by Alex Zelikovsky High-Throughput Sequencing Applications to Molecular Epidemiology 1. Wertheim, J.O., Brown, A.J.L., Hepler, N.L., Mehta, S.R., Richman, D.D., Smith, D.M. […]- Date
- July 20, 2016
07/20/2016 @ 09:15-10:00 Tutorial by Fereydoun Hormozdiari Detecting Structural Variation 1. Hormozdiari, F., Alkan, C., Eichler, E.E. and Sahinalp, S.C., 2009. Combinatorial algorithms for structural variation […]- Date
- July 20, 2016
07/20/2016 @ 10:00-10:45 Research Talk by Jason Ernst Deciphering the Non-coding Human Genome 1. Ernst, J. and Kellis, M., 2010. Discovery and characterization of chromatin states […]- Date
- July 20, 2016
07/20/2016 @ 14:00-14:45 Research Talk by Bogdan Pasaniuc Methods to understand the Polygenic Architecture of Complex Traits 1. Shi, H., Kichaev, G. and Pasaniuc, B., 2016. […]- Date
- July 20, 2016
07/20/2016 @ 15:15-16:00 Tutorial by Ben Raphael Computational Analysis of Somatic Mutations in Cancer 1. Ding, L., Wendl, M.C., McMichael, J.F. and Raphael, B.J., 2014. Expanding […]- Date
- July 20, 2016
07/20/2016 @ 16:15-17:00 Research Talk by Alexander Schönhuth Quantifying Uncertainties in Big Genome Data 1. Marschall, T., Costa, I.G., Canzar, S., Bauer, M., Klau, G.W., Schliep, […]- Date
- July 21, 2016
07/21/2016 @ 09:15-10:00 Research Talk by Jennifer Listgarten Structured Populations in Genetics 1. Lippert, C., Listgarten, J., Liu, Y., Kadie, C.M., Davidson, R.I. and Heckerman, D., […]- Date
- July 21, 2016
07/21/2016 @ 10:00-10:45 Tutorial by Saharon Rosset Bootstrap – The Statistician’s Magic Wand 1. Efron, B. and Tibshirani, R.J., 1994. An introduction to the bootstrap. CRC […]- Date
- July 21, 2016
07/21/2016 @ 14:00-14:45 Research Talk by Noah Zaitlen Variances and Covariances in Recently Admixed Populations 1. Zou, J.Y., Park, D.S., Burchard, E.G., Torgerson, D.G., Pino-Yanes, M., […]- Date
- July 21, 2016
07/21/2016 @ 14:45-15:30 Research Talk by Brian Browning Genotype Imputation with Millions of Reference Samples 1. Marchini, J. and Howie, B., 2010. Genotype imputation for genome-wide […]- Date
- July 21, 2016
07/21/2016 @ 16:00-16:50 Research Talk by Dan Geschwind Integrative Genomics in Neuropsychiatric Diseases 1. Parikshak, N.N., Gandal, M.J. and Geschwind, D.H., 2015. Systems biology and gene […]- Date
- July 22, 2016
07/22/2016 @ 09:15-10:00 Tutorial by Sriram Sankararaman Evolutionary Models in Population Genomics 1. Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, […]- Date
- July 22, 2016
07/22/2016 @ 09:15-10:00 Tutorial by Sriram Sankararaman Evolutionary Models in Population Genomics 1. Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, […]- Date
- July 22, 2016
07/22/16 @ 10:00-10:45 Tutorial by Wei Wang Alignment-free RNASeq Analysis 1. Zhang, Z. and Wang, W., 2014. RNA-Skim: a rapid method for RNA-Seq quantification at transcript […]- Date
- July 22, 2016
07/22/16 @ 14:00-14:45 Research Talk by Jessica (Jingyi) Li NMFP – Identifying mRNA Isoforms from RNASeq Data 1. Ye, Y. and Li, J.J., 2016. NMFP: a […]- Date
- July 22, 2016
07/22/2016 @ 15:15-16:0 Research Talk by Kirk Lohmueller The Interplay Between Demography and Selection in Dogs, Wolves, and Foxes 1. Marsden, C.D., Ortega-Del Vecchyo, D., O’Brien, […]- Date
- July 25, 2016
We apologize that this video is not currently available. 07/25/2016 @ 09:30-10:15 Tutorial by Paul Medvedev Applying CS Tools to Biological Questions: A Case Study in […]- Date
- July 26, 2016
We apologize that this video is not currently available. 07/26/2016 @ 09:30-10:15 Tutorial by John Novembre Models and Methods for Detecting Population Structure in Humans 1. […]- Date
- July 26, 2016
We apologize that this video is not currently available. 07/26/2016 @ 10:15-11:00 Research Talk by Noah Rosenberg Mathematical Bounds on Population-Genetic Statistics 1. Jakobsson, M., Edge, […]- Date
- July 27, 2016
07/27/2016 @ 09:30-10:15 Tutorial by Kenneth Lange MM Algorithms 1. Hunter, D.R. and Lange, K., 2004. A tutorial on MM algorithms. The American Statistician, 58(1), pp.30-37.- Date
- July 28, 2016
07/28/2016 @ 09:30-10:15 Research Talk by Saharon Rosset Mixed Modeling for Case-control Genome-wide Studies: A Major Challenge 1. Golan, D., Lander, E.S. and Rosset, S., 2014. […]- Date
- July 29, 2016
07/29/2016 @ 09:30-10:15 Research Talk by Jonathan Flint The Genetics of Depression 1. Flint, J. and Kendler, K.S., 2014. The genetics of major depression. Neuron, 81(3), […]- Date
- July 29, 2016
07/29/2016 @ 11:45-12:30 Research Talk by Yi Xing Elucidating the Complexity of the Mammalian m⁶A Epitranscriptome 1. Molinie, B., Wang, J., Lim, K.S., Hillebrand, R., Lu, […]- Date
- August 1, 2016
08/01/2016 @ 09:30-10:15 Tutorial by Jason Ernst Epigenome Imputation 1. Ernst, J. and Kellis, M., 2015. Large-scale imputation of epigenomic datasets for systematic annotation of diverse […]- Date
- August 1, 2016
08/01/2016 @ 10:15-11:00 Tutorial by Emilia Huerta-Sanchez Evolutionary Adaptation in Humans 1. Nielsen, R., 2005. Molecular signatures of natural selection. Annu. Rev. Genet., 39, pp.197-218. 2. […]- Date
- August 2, 2016
08/02/2016 @ 10:30-11:15 Tutorial by Bogdan Pasaniuc Integrative Fine-mapping for Causal Variants 1. Kichaev, G. and Pasaniuc, B., 2015. Leveraging functional-annotation data in trans-ethnic fine-mapping studies. […]- Date
- August 2, 2016
08/02/2016 @ 11:15-12:00 Tutorial by Noah Zaitlen Conditioning in Association Studies 1. Zaitlen, N., Lindström, S., Pasaniuc, B., Cornelis, M., Genovese, G., Pollack, S., Barton, A., […]- Date
- August 3, 2016
08/03/2016 @ 10:30-11:30 Tutorial by Sagi Snir Tutorial on reconstructing Evolution from the Tiniest Fractions: Basics, Challenges, and Application 1. Hinchliff, C.E., Smith, S.A., Allman, J.F., […]- Date
- August 4, 2016
08/04/2016: 10:30-11:15 Research Talk by Sagi Snir Research Talk on reconstructing Evolution from the Tiniest Fractions: Basics, Challenges, and Application 1. Steel, M., 1992. The complexity […]- Date
- August 4, 2016
08/04/2016 @ 11:15-12:15 Research Talk by Kirk Lohmueller Comparison of the Distribution of Fitness Effects across Species using the Poisson Random Field Framework 1. Sawyer, S.A. […]- Date
- August 5, 2016
08/05/2016 @ 11:15-12:00 Research Talk by Sriram Sankararaman Inferring the Structure of Archaic Admixture in Modern Humans 1. Patterson, N., Moorjani, P., Luo, Y., Mallick, S., […]- Date
- August 8, 2016
08/08/2016 @ 09:30-10:30 Tutorial by Barbara Engelhardt Dimension Reduction Methods to identify Latent Structure in Genomic Data- Date
- August 8, 2016
08/08/2016 @ 10:30-11:30 Tutorial by Sriram Sankararaman Challenges in Genomic Privacy 1. Erlich, Y. and Narayanan, A., 2014. Routes for breaching and protecting genetic privacy. Nature […]- Date
- August 9, 2016
08/09/2016 @ 09:30-10:30 Research Talk by Barbara Engelhardt Exploring Covariation in Gene Expression Data- Date
- August 9, 2016
08/09/2016 @ 10:30-11:30 Tutorial by Kenneth Lange Next Generation Statistical Genetics: Modeling, Penalization, and Optimization in High-dimensional Data 1. Lange, K., Papp, J.C., Sinsheimer, J.S. and […]- Date
- August 10, 2016
08/10/2016 @ 09:30-10:30< Research Talk by Jo Hardin Assumptions in Normalizing RNASeq Data 1. Wang, Z., Gerstein, M. and Snyder, M., 2009. RNA-Seq: a revolutionary tool […]- Date
- August 10, 2016
08/10/2016 @ 15:00-16:00 Tutorial by Jonathan Flint Quantitative Trait Locus Detection 1. Flint, J., Valdar, W., Shifman, S. and Mott, R., 2005. Strategies for mapping and […]- Date
- August 10, 2016
08/10/2016 @ 16:00-17:00 External (non-CGSI) Event presented by Kin Fai Au UCLA Bioinformatics Lecture: Transcriptome Analysis by Hybrid Sequencing 1. Au, K.F., Sebastiano, V., Afshar, P.T., […]- Date
- August 11, 2016
08/11/2016 @ 09:30-10:30 Tutorial by David Koslicki Bacterial Community Reconstruction via Compressed Sensing 1. Candès, E.J. and Wakin, M.B., 2008. An introduction to compressive sampling. IEEE […]- Date
- August 11, 2016
08/11/2016 @ 10:30-11:30 Tutorial by Jason Ernst Functional Genomics Time-series Analysis 1. Ernst, J., Nau, G.J. and Bar-Joseph, Z., 2005. Clustering short time series gene expression […]- Date
- August 12, 2016
08/12/2016 @ 10:00-11:00 Research Talk by Joel Mefford Linear Mixed Models – and their Equivalents- Date
- July 6, 2017
07/06/2017 @ 09:25-09:55 Retreat Research Talk by Vasilis Ntranos Clustering a million cells: Large-scale scRNA-Seq data analysis 1. Ntranos, V., Kamath, G.M., Zhang, J.M., Pachter, L. […]- Date
- July 6, 2017
07/06/2017 @ 10:40-11:10 Retreat Research Talk by Serghei Mangul Squeezing the last drop out of next generation sequencing data- Date
- July 6, 2017
07/06/2017 @ 13:10-13:40 Retreat Research Talk by Andy Dahl Adjusting for principal components of molecular phenotypes induces replicating false positives 1. Dahl, A., Guillemot, V., Mefford, […]- Date
- July 6, 2017
07/06/2017 @ 14:10-14:40 Retreat Research Talk by Ilan Gronau Population phylogenomics: A genealogical perspective 1. Gronau, I., Hubisz, M.J., Gulko, B., Danko, C.G. and Siepel, A., […]- Date
- July 6, 2017
We apologize that this video is currently unavailable. 07/06/2017 @ 14:40-15:10 Retreat Research Talk by Na Cai Heterogeneity in depression 1. Cai, N., Bigdeli, T.B., Kretzschmar, […]- Date
- July 7, 2017
07/07/2017 @ 09:10-09:40 Retreat Research Talk by Marzia Cremona Functional data analysis testing and linear modeling for high-resolution “omics” data 1. Campos-Sánchez, R., Cremona, M.A., Pini, […]- Date
- July 7, 2017
07/07/2017 @ 09:40-10:10 Retreat Research Talk by David Koslicki Improving Min Hash for Metagenomic Classification 1. Broder, A.Z., 1997, June. On the resemblance and containment of […]- Date
- July 7, 2017
07/07/2017 @ 13:10-13:40 Retreat Research Talk by Anil Ori Integration of longitudinal gene expression with polygenic disease risk establishes human neuronal differentiation as a model to […]- Date
- July 7, 2017
07/07/2017 @ 14:00-14:30 Retreat Research Talk by YoSon Park Large, diverse population cohorts of hiPSCs and derived hepatocyte-like cells reveal functional genetic variation at blood lipid-associated […]- Date
- July 7, 2017
07/07/2017 @ 14:30-15:00 Retreat Research Talk by Nikita Alexeev Estimation of the rate of transpositions and the true evolutionary distance 1. Alexeev, N. and Alekseyev, M.A., […]- Date
- July 7, 2017
07/07/2017 @ 15:00-15:30 Retreat Research Talk by Loes Olde Loohuis Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia 1. Mangul, S., Loohuis, L.M.O., […]- Date
- July 10, 2017
07/10/2017 @ 09:15-10:00 Research Talk by Lior Pachter An introduction to pseudoalignment 1. Bray, N.L., Pimentel, H., Melsted, P. and Pachter, L., 2016. Near-optimal probabilistic RNA-seq […]- Date
- July 10, 2017
07/10/2017 @ 10:00-10:45 Tutorial by Ilan Gronau Demography inference: From parameter estimation to model selection 1. Gronau, I., Hubisz, M.J., Gulko, B., Danko, C.G. and Siepel, […]- Date
- July 10, 2017
07/10/2017 @ 13:30-14:15 Research Talk by Jennifer Listgarten Machine learning for CRISPR gene editing 1. Fusi, N., Smith, I., Doench, J. and Listgarten, J., 2015. In […]- Date
- July 10, 2017
07/10/2017 @ 14:45-15:30 Research Talk by Dana Pe’er Imputation in Single Cell RNA-seq Data 1. van Dijk, D., Nainys, J., Sharma, R., Kathail, P., Carr, A.J., […]- Date
- July 10, 2017
07/10/2017 @ 16:00-16:45 Research Talk by Michael Schatz Advances in genome sequencing and assembly 1. Schatz, M.C., Delcher, A.L. and Salzberg, S.L., 2010. Assembly of large […]- Date
- July 11, 2017
07/11/2017 @ 11:15-12:00 Research Talk by James Zou Deep learning in genomics: Introduction and examples- Date
- July 11, 2017
We apologize that this video is currently unavailable. 07/11/2017 @ 09:15-10:00 Tutorial by Alexander Schönhuth Assembling polyploid genomes 1. Baaijens, J.A., El Aabidine, A.Z., Rivals, E. […]- Date
- July 11, 2017
07/11/2017 @ 10:00-10:45 Research Talk by William (Xiaoquan) Wen Bayesian approaches for integrative genetic association analysis: Data integration and scalable computation 1. Wen, X., Lee, Y., […]- Date
- July 11, 2017
07/11/2017 @ 12:00-12:45 Research Talk by Can Alkan Next-generation sequence characterization of complex genome structural variation 1. Alkan, C., Coe, B.P. and Eichler, E.E., 2011. Genome […]- Date
- July 12, 2017
07/12/2017 @ 09:15-10:00 Tutorial by David Koslicki The CAMI Project: Assessment of computational techniques in metagenomics 1. Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, […]- Date
- July 12, 2017
07/12/2017 @ 10:00-10:45 Tutorial by David Tse How to solve NP-hard assembly problems in linear time 1. Bresler, G., Bresler, M.A. and Tse, D., 2013. Optimal […]- Date
- July 12, 2017
07/12/2017 @ 13:30-14:15 Research Talk by Ran Blekhman Human genomic control of the microbiome 1. Goodrich, J.K., Waters, J.L., Poole, A.C., Sutter, J.L., Koren, O., Blekhman, […]- Date
- July 12, 2017
07/12/2017 @ 14:45-15:30 Research Talk by Daniel Wegmann Tracing the spread of farming using ancient DNA: Bioinformatic challenges and population genetic insights 1. Kousathanas, A., Leuenberger, […]- Date
- July 12, 2017
07/12/2017 @ 16:00-16:45 Research Talk by Brian Browning Genotype phasing with large sample sizes 1. Kong, A., Masson, G., Frigge, M.L., Gylfason, A., Zusmanovich, P., Thorleifsson, […]- Date
- July 13, 2017
07/13/2017 @ 09:00-09:45 Tutorial by Or Zuk Co-evolution analysis: Methods and applications 1. Felsenstein, J., 1985. Phylogenies and the comparative method. The American Naturalist, 125(1), pp.1-15. […]- Date
- July 13, 2017
07/13/2017 @ 09:45-10:30 Tutorial by Itsik Pe’er Identity by descent in medical and population genomics 1. Palamara, P.F., Francioli, L.C., Wilton, P.R., Genovese, G., Gusev, A., […]- Date
- July 13, 2017
07/13/2017 @ 13:00-13:45 Tutorial by Lior Pachter Differential analysis of count data in genomics 1. Anders, S. and Huber, W., 2010. Differential expression analysis for sequence […]- Date
- July 13, 2017
07/13/2017 @ 13:45-14:30 Research Talk by Melissa Gymrek Analyzing complex repeat variation from high throughput sequencing data 1. Gymrek, M., Golan, D., Rosset, S. and Erlich, […]- Date
- July 13, 2017
07/13/2017 @ 15:00-15:45 Research Talk by Leonid Kruglyak Complex Traits and Simple Systems- Date
- July 13, 2017
07/13/2017 @ 15:45-16:30 Research Talk by Elhanan Borenstein Multi-omic and model-based analysis of the human microbiome 1. Manor, O. and Borenstein, E., 2017. Systematic Characterization and […]- Date
- July 14, 2017
07/14/2017 @ 09:15-10:00 Tutorial by Saharon Rosset Stochastic process models for mutations, their estimation from data, and their uses 1. Huelsenbeck, J.P. and Crandall, K.A., 1997. […]- Date
- July 14, 2017
07/14/2017 @ 10:00-10:45 Research Talk by Jason Ernst Computational approaches for deciphering the non-coding human genome 1. Ernst, J. and Kellis, M., 2010. Discovery and characterization […]- Date
- July 14, 2017
07/14/2017 @ 13:30-14:15 Research Talk by Alex Zelikovsky Inference of metabolic pathway activity from metatranscriptomic reads 1. Temate-Tiagueu, Y., Al Seesi, S., Mathew, M., Mandric, I., […]- Date
- July 14, 2017
07/14/2017 @ 14:45-15:30 Research Talk by Cenk Sahinalp HIT’nDRIVE: Patient-Specific Multi-Driver Gene Prioritization for Precision Oncology 1. El-Kebir, M., Satas, G., Oesper, L. and Raphael, B.J., […]- Date
- July 14, 2017
07/14/2017 @ 16:00-16:45 Research Talk by Sagi Snir A universal PaceMaker as a better explanation of evolution and aging 1. Snir, S., Wolf, Y.I. and Koonin, […]- Date
- July 17, 2017
07/17/2017 @ 09:15-10:00 Research Talk by David Tse Maximally correlation and principal component analysis 1. Rényi, A., 1959. On measures of dependence. Acta mathematica hungarica, 10(3-4), […]- Date
- July 17, 2017
07/17/2017 @ 10:30-11:15 Research Talk by Saharon Rosset Quality preserving databases for statistically sound “big data” analysis on public databases 1. Rosset, S., Aharoni, E. and […]- Date
- July 17, 2017
07/17/2017 @ 14:30-15:15 Research Talk by Kin Fai Au Transcriptome analysis at the gene isoform level using hybrid sequencing 1. Au, K.F., Sebastiano, V., Afshar, P.T., […]- Date
- July 18, 2017
07/18/2017 @ 09:15-10:00 Research Talk by Jo Hardin Prediction intervals for random forests with applications to high throughput data 1. Chen, X. and Ishwaran, H., 2012. […]- Date
- July 18, 2017
07/18/2017 @ 10:30-11:30 Research Talk by Ilan Gronau Inferring a complex network of interbreeding between modern and archaic humans 1. Green, R.E., Krause, J., Briggs, A.W., […]- Date
- July 19, 2017
07/19/2017 @ 09:15-10:00 Tutorial by John Novembre Computational tools for understanding population structure in genetic variation data 1. Novembre, J. and Stephens, M., 2008. Interpreting principal […]- Date
- July 19, 2017
07/19/2017 @ 10:30-11:15 Tutorial by Ben Raphael Inferring tumor evolution- Date
- July 19, 2017
07/19/2017 @ 13:30-14:15 Research Talk by Or Zuk Estimating gene-specific selection parameters from human variation data: New methods and applications 1. Zuk, O., Schaffner, S.F., Samocha, […]- Date
- July 20, 2017
07/20/2017 @ 09:15-10:00 Research Talk by Jae-Hoon Sul Large-scale genetic studies of human complex traits 1. Sul, J.H., Cade, B.E., Cho, M.H., Qiao, D., Silverman, E.K., […]- Date
- July 20, 2017
07/20/2017 @ 10:30-11:15 Tutorial by Fabio Vandin Computational discovery of significantly mutated genes and pathways in cancer 1. Vandin, F., Upfal, E. and Raphael, B.J., 2011. […]- Date
- July 20, 2017
07/20/2017 @ 13:30-14:15 Research Talk by David Koslicki Using the Earth-mover’s Distance to compare microbial communities 1. McClelland, J. and Koslicki, D., 2016. EMDUnifrac: Exact linear […]- Date
- July 21, 2017
07/21/2017 @ 10:30-11:15 Research Talk by Francesca Chiaromonte Statistics for large, complex data and its role in “Omics” research 1. Liu, Y., Chiaromonte, F. and Li, […]- Date
- July 21, 2017
07/21/2017 @ 13:30-14:15 Research Talk by Sagiv Shifman Genomics approaches to study neurodevelopmental disorders 1. Ben-David, E. and Shifman, S., 2012. Networks of neuronal genes affected […]- Date
- July 24, 2017
07/24/2017 @ 09:15-10:00 Tutorial by Bogdan Pasaniuc Genetic correlations to gain insights into relations between traits 1. Mancuso, N., Shi, H., Goddard, P., Kichaev, G., Gusev, […]- Date
- July 24, 2017
07/24/2017 @ 10:30-11:15 Research Talk by Jessica (Jingyi) Li Neyman-Pearson (NP) classification algorithms and NP Receiver Operating Characteristic (NP-ROC) curves 1. Tong, X., Feng, Y. and […]- Date
- July 24, 2017
07/24/2017 @ 13:30-14:15 Research Talk by Fabio Vandin Computational methods for survival analysis in genome-wide cancer studies 1. Vandin, F., Upfal, E. and Raphael, B.J., 2011. […]- Date
- July 25, 2017
07/25/2017 @ 09:00-10:00 Research Talk by Sriram Sankararaman Probabilistic PCA for large-scale genetic data- Date
- July 25, 2017
07/25/2017 @ 10:30-11:30 Research Talk by Kirk Lohmueller Variation in positive and negative selection across the Tree of Life 1. Galtier, N., 2016. Adaptive protein evolution […]- Date
- July 25, 2017
07/25/2017 @ 13:30-14:15 Research Talk by Fereydoun Hormozdiari Discovery of genetic variants and modules in neurodevelopmental disorders 1. O’Roak, B.J., Vives, L., Girirajan, S., Karakoc, E., […]- Date
- July 26, 2017
07/26/2017 @ 09:00-10:00 Tutorial by Noah Zaitlen Covariate adjustment in genetics and genomics 1. Zaitlen, N., Lindström, S., Pasaniuc, B., Cornelis, M., Genovese, G., Pollack, S., […]- Date
- July 26, 2017
07/26/2017 @ 10:30-11:00 Research Talk by Barbara Engelhardt Joint analysis of gene expression levels and histological images identifies genes associated with tissue morphology 1. Heard, N.A., […]- Date
- September 21, 2017
07/19/2017 UCLA Undergraduate Research Program in Neurogenetics 12:00pm in the Gonda First Floor Conference Room Research Talk by Nelson Freimer The Depression Grand Challenge: UCLA’s Big Data […]- Date
- September 21, 2017
07/26/2017 UCLA Undergraduate Research Program in Neurogenetics 12:00pm in the Gonda First Floor Conference Room Research Talk by Jonathan Flint Genes can “Influence” Personality and Behavior- Date
- September 21, 2017
08/09/2017 UCLA Undergraduate Research Program in Neurogenetics 12:00pm in the MacDonald Research Labs First Floor Conference Room Research Talk by Roel Ophoff Genomic Studies of Psychiatric […]- Date
- March 8, 2018
Feb 26th – March 2nd 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Po-Ru Loh Detecting mosaic chromosomal alterations using long-range phasing- Date
- March 8, 2018
Feb 26th – March 2nd 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Roger Piqué-Regí Tools for identifying gene regulatory variants and […]- Date
- March 8, 2018
Feb 26th – March 2nd 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Kayhan Batmanghelich Imaging as High-Dimensional Endophenotype- Date
- March 8, 2018
Feb 26th – March 2nd 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Geoffrey Schiebinger Analyzing Developmental Processes with Optimal Transport- Date
- March 8, 2018
Feb 26th – March 2nd 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Smita Krishnaswamy Manifold-Learning Yields Insights into Single Cell Data […]- Date
- March 8, 2018
Feb 26th – March 2nd 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Alex Zelikovsky Modeling and Simulating Evolution and Spread of […]- Date
- March 8, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by David Knowles Probabilistic programming for genomics- Date
- March 8, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Peter Kharchenko Single-cell analysis of heterogeneity in normal and […]- Date
- March 8, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Melissa Gymrek Interpreting the role of short tandem repeats […]- Date
- March 8, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Alexis Battle Methods for analysis of rare genetic variants- Date
- March 8, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by John Novembre Computational tools for understanding geographic structure in […]- Date
- March 8, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Yanjun Qi Making Deep Learning Interpretable for Analyzing Sequential […]- Date
- March 8, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by William Noble Machine learning methods for making sense of […]- Date
- March 9, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Hae Kyung Im Prediction and Dissection of Complex Traits- Date
- March 9, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Noah Zaitlen A Short Tutorial on Linear Mixed Model […]- Date
- March 9, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Manuel Rivas Large-scale inference across population biobanks- Date
- March 9, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Casey Greene Deep learning: privacy preserving data sharing along […]- Date
- March 9, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Sushmita Roy Regulatory network inference on developmental and evolutionary […]- Date
- March 9, 2018
Feb 26th – March 2nd, 2018 CGWI – Computational Genomics Winter Institute IPAM Lecture Hall Research Talk by Su-In Lee Interpretable Machine Learning for Precision Medicine- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Saharon Rosset The Multivariate Normal Distribution: Linear Mixed Models and Beyond- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Lior Pachter What is CCA, why you should care, and how to […]- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by David Koslicki IndieCut: Evaluating performance of motif discovery algorithms- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Kirk Lohmueller Methods for inference of purifying selection and dominance coefficients from […]- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Fereydoun Hormozdiari Contribution of structural variation to genome structure- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Jessica (Jingyi) Li Statistical Methods for Bulk and Single-cell RNA-seq data- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Can Alkan Characterization of genomic structural variation using various sequencing […]Sayan Mukherjee: Compositional models for microbiome data and time series models for microbiome data
Sayan Mukherjee: Compositional models for microbiome data and time series models for microbiome data
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- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sayan Mukherjee Compositional models for microbiome data and time series […]- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Michael Schatz Advances in Genome Sequencing and Assembly- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Jian Ma Algorithms for studying nuclear genome organization and evolution- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sagiv Shiffman Essential genes linked to neurodevelopmental disorders- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sriram Sankararaman Probabilistic modeling and inference in genomics- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Bogdan Pasaniuc How to identify susceptibility genes in post-GWASstudies- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Iuliana Ionita Statistical methods for the integration of functional genomics data […]- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Mark Chaisson Detecting variation using single-molecule sequencing- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Ilan Gronau Re-examining demography inference from genomic data- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Cenk Sahinalp Tumor evolution modeling through the use of single […]- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Brian Browning Genotype imputation with large reference panels in the cloud- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Eran Halperin Methods for Deconvolution of Methylation Signals- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sagi Snir Non Linearity of Epigenetic Aging is Detected via […]- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Jason Ernst Computational Epigenomic Approaches for Interpreting the Non-coding Human […]- Date
- November 26, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by William (Xiaoquan) Wen Bayesian integrative analysis of molecular QTL and […]- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Vikas Bansal Haplotyping human genomes using whole-genome sequencing- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Mark Chaisson Resolving multicopy duplications using assembly by phasing- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Lior Pachter (Computational and experimental) methods for multiplexed single-cell RNA […]- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Or Zuk improved Deep-Learning Methods for Enhanceras Identification and Interpretation- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Rayan Chikhi Data structures for k-mers (applications: reference-free sequencing data analysis)- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Jae Hoon Sul Contribution of common and rare variants to bipolar […]- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Ben Langmead Using huge public sequencing datasets to answer scientific […]- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Eytan Ruppin Harnessing genetic interactions to advance whole genome precision […]- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Rayan Chikhi Methods for metagenome assembly (de Bruijn graphs)- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Pavel Pevzner Estimating metagenome diversity by hybrid sequencing by short […]- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Eleazar Eskin Discovering the Causal Variants Involved in GWAS Studies- Date
- November 28, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by James Zou Contrastive learning with applications to biomedical data- Date
- December 6, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sohini Ramachandra Applications of Latent Dirichlet Allocations in Genomics- Date
- December 6, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sharon Aviran Automated recognition of functional RNA elements by their […]- Date
- December 6, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Ran Blekhman Genetics, Cell Biology, and Developmental Ecology, Evolution and Behavior- Date
- December 6, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Nicholas Chia Understanding the interface between microbial metabolism and colon cancer- Date
- December 6, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Emilia Huerta Sanchez The impact of admixture on patterns of […]- Date
- December 6, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Thomas Sharpton Imputing the functional capacity of microbiomes through metagenome […]- Date
- December 12, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by John Novembre Methods to characterize geographic structure in genetic variation- Date
- December 12, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Siavash Mirareb Genome-wide species tree reconstruction despite gene tree discordance- Date
- December 12, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by James Zou Tutorial of optimal transport with applications in genomics- Date
- December 12, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Daniel Wegmann Incorporating genotype uncertainty in population genetics: general concepts […]- Date
- December 12, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Vineet Bafna Extrachromosomal DNA and complex structural variation in tumor […]- Date
- December 12, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Or Zuk Inferences of Selection from Intra-Species and Inter-Species Variation- Date
- December 12, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by John Novembre Inference of haplotype (or community) composition in pooled […]- Date
- December 18, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by David Koslicki Multi-resolutionk-mer classification of metagenomic samples- Date
- December 18, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sagi Snir Constructing the Microbial Tree of Life Using Quartet Based […]- Date
- December 18, 2018
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Jonathan Flint Genetic architecture of psychiatric disorders- Date
- January 2, 2019
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Sayan Mukherjee Mapping epistatic traits using kernel methods and variance component […]- Date
- January 2, 2019
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Ilan Gronau Using the ancestral recombination graph to investigate species evolution- Date
- January 2, 2019
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Saharon Rosset Speciation without Isolation: The Future of Humans?- Date
- January 2, 2019
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Jason Ernst Computational approaches for understanding the noncoding human genome- Date
- January 2, 2019
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Ben Raphael Inferring Cellular Migrations in Metastatic Cancers- Date
- January 2, 2019
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by A. Murat Eren From characterizing genomic heterogeneity within single populations […]- Date
- January 2, 2019
July 11th – August 3rd, 2018 UCLA CGSI – Computational Genomics Summer Institute Research Talk by Shai Carmi Hidden Markov Models for pre-implantation genetic testing and ancient […]- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Research Talk by Sriram Sankararaman Inferring Genetic Ancestry and its […]- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Research Talk by Ben Raphael Clonal Evolution in Tumors and Metastases- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Research Talk by Jonathan Flint Genetics of Depression- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Research Talk by Jennifer Listgarten Machine Learning for Protein Engineering- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Research Talk by Leonid Kruglyak Massively Parallel Genome Engineering with […]- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Research Talk by Eran Halperin Recovering Hidden Genomic Signal in […]- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Research Talk by Kelsey Martin Making Memories Last: Neurons, Genes, […]- Date
- March 4, 2019
February 1st, 2019 UCLA Scientific Symposium – AWS & UCLA CGWI – Computational Genomics Winter Institute Opening Remarks with Eleazar Eskin, Head of Computational Medicine and Jayathi […]
